chr2:29443697:A>C Detail (hg19) (ALK)

Information

Genome

Assembly Position
hg19 chr2:29,443,697-29,443,697
hg38 chr2:29,220,831-29,220,831 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_004304.4:c.3520T>G NP_004295.2:p.Phe1174Val
Ensemble ENST00000389048.8:c.3520T>G ENST00000389048.8:p.Phe1174Val
ENST00000618119.4:c.2389T>G ENST00000618119.4:p.Phe797Val
Summary

MGeND

Clinical significance Likely pathogenic Pathogenic not provided
Variant entry 4
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 105590 OMIM
HGNC 427 HGNC
Ensembl ENSG00000171094 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM28054 COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
not provided bronchus or lung, unspecified not provided MGS000041
(TMGS000094) 		Hitoshi Nakagama National Cancer Center Japan
Pathogenic neuroblastoma germline MGS000001
(TMGS000154) 		Kenjiro Kosaki Keio University
Likely pathogenic other somatic MGS000001
(TMGS000162) 		Kenjiro Kosaki Keio University
Likely pathogenic other somatic MGS000001
(TMGS000174) 		Kenjiro Kosaki Keio University
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2015-10-07 no assertion criteria provided Neuroblastoma, susceptibility to, 3 germline somatic Detail
Pathogenic 2016-05-31 no assertion criteria provided neuroblastoma somatic Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.240 Neuroblastoma, susceptibility to, 3 NA CLINVAR Detail
0.023 Central neuroblastoma A syndromic presentation associating congenital neuroblastoma with severe enceph... BeFree 24811761 Detail
0.279 neuroblastoma A syndromic presentation associating congenital neuroblastoma with severe enceph... BeFree 24811761 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_004304.5(ALK):c.3520T>G (p.Phe1174Val) AND Neuroblastoma, susceptibility to, 3 ClinVar Detail
NM_004304.5(ALK):c.3520T>G (p.Phe1174Val) AND Neuroblastoma ClinVar Detail
NA DisGeNET Detail
A syndromic presentation associating congenital neuroblastoma with severe encephalopathy and an abno... DisGeNET Detail
A syndromic presentation associating congenital neuroblastoma with severe encephalopathy and an abno... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs281864719 dbSNP
Genome
hg19
Position
chr2:29,443,697-29,443,697
Variant Type
snv
Reference Allele
A
Alternative Allele
C
Variant (CIViC) (CIViC Variant)
F1174V
Transcript 1 (CIViC Variant)
ENST00000389048.3
Variant URL (CIViC Variant)
https://civic.genome.wustl.edu/links/variants/1505
Genome browser